I really liked Cornell when I visited. The students seemed really chill and they have the amazing simulation center. They seemed happier with the PBL than students at any other school with PBL, and the triple jump thing seemed like a really reasonable way to assess student knowledge. All students at schools with honors claim it doesn't affect them, but I know a few students there who said honestly (as in outside the admissions context) that it did not influence the way they studied at all and that they didn't pay attention to it.
I guess it depends what you are looking for OP. What were your impressions when you interviewed at these schools? Anyone who tries to tell you one is unequivocally better than the other doesn't have your best interest at heart - I'm a big believer in "fit".
But if you want to know where you are going, that alone is a good reason to drop a WL - this process is long enough without them.