Here is the list of schools that are friendly towards students who got a regular master's degree. All this info was found on this thread
http://forums.studentdoctor.net/threads/grad-school-gpa-does-it-actually-matter.796298/
U Colorado - averages all grades together
U Virginia - averages uGPA and gGPA
Eastern Virginia Medical School
Virginia Commonwealth University - website specifically discusses applicants with weak GPAs pursuing a masters degree
uMich - averages u and gGPAs
Georgetown
Wayne State and UMDNJ might entirely replace uGPA
UMinnesota
UCentral Florida
Arizona (initially screened only with uGPA, but then postbac and grad GPA considered).
UCalifornia-Irvine-adds an additional point to your "score"
UConn-includes gGPA in their GPA calculation
Albany-"includes all coursework"
Columbia
OUWB
BU
Drexel
Hofstra
University of Pittsburgh
SUNY Upstate
St. Louis University
New York Medical College (especially for re-applicants)
Dartmouth
Northwestern University
Also, all DO schools (if I'm wrong, someone please correct me) include all coursework into your GPA.